Innovations in Education are based on the use of new effective educational and information technologies, introduction of progressive forms of organization of educational process, active learning methods. The significant role in the educational system is the development and implementation of virtual labs. For the development of the contemporary science section as bioinformatics, it is necessary to extend the possibility of using computers for processing the information received with the use of modern devices. These research methods include atomic force microscopy. For Students of the specialty 06.05.01 "Bioengineering and Bioinformatics" in the SD "Basics of Nanobiotechnology" it has been developed a virtual laboratory work on "Processing of nanostructured images of biomolecules." The basis for the development of laboratory work was the handbook modified for affordable performance. Laboratory workshop allows you to briefly find out the theory of atomic force microscopy, the organization and the principle of operation of the device. It allows Students to quickly learn the using the program at the AFM image processing Nova 1.0.26.1443. In the laboratory work for the tasks solution the biological objects are selected from the images catalog, and to study and describe of these objects the software is used. Students work with images of biomolecules in the program: change them (increasing, selection of separate areas, evaluate the geometrical parameters, work with 3D-image), writing a description and compare objects with each other. The results are summarized in a table and conclusion. The effectiveness and usefulness of the created laboratory work are proved by the results of Student’s survey and tested in the final and interim certification. This kind of work is suitable for distance learning, to provide a laboratory practicum in SD "Nanotechnology", "Modern methods of analysis" for other specialties as an educational and methodological materials.